doxendine You are talking about two things:
- Serve files from the Moodle in MoodleBox directly from the USB stick.
For the solution, please re-read my previous answer.
- Referencing a whole directory tree from Moodle in one operation
This is a question to Moodle upstream, moodle.org. As far as I know, you can not link a Folder resource to a directory. The only way of doing it IMHO is what @krause wrote, i.e. upload the full zip. Yes, that will defeat 1.